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Building Production RAG Systems: Architecture and Best Practices

Neurocell Team January 15, 2026 12 min read
Building Production RAG Systems: Architecture and Best Practices

Building Production RAG Systems: Architecture and Best Practices

Retrieval Augmented Generation (RAG) has emerged as one of the most powerful patterns for building AI systems that can access and reason over large knowledge bases. However, moving from a proof-of-concept to a production-ready RAG system requires careful consideration of architecture, performance, and reliability.

Understanding RAG Architecture

At its core, a RAG system combines information retrieval with large language models. When a user asks a question, the system retrieves relevant context from a knowledge base and augments the LLM prompt with that information, enabling accurate and contextual responses.

Key Components

1. Document Processing Pipeline

The foundation of any RAG system is how you process and chunk your documents. Poor chunking strategies lead to irrelevant retrievals and degraded performance.

  • Semantic Chunking: Instead of naive fixed-size chunks, segment documents based on semantic boundaries (paragraphs, sections, topics)
  • Overlap Strategy: Maintain 10-20% overlap between chunks to preserve context at boundaries
  • Metadata Enrichment: Tag chunks with document source, creation date, author, and topic classifications

2. Vector Database Selection

Choosing the right vector database is critical for scalability and performance:

  • Pinecone: Managed solution, excellent for getting started quickly
  • Weaviate: Open-source, strong filtering capabilities
  • Qdrant: High performance, good for high-throughput applications
  • PostgreSQL + pgvector: Best when you need to combine vector search with traditional database operations

3. Embedding Strategy

Your embedding model determines how well your system understands semantic similarity.

  • OpenAI text-embedding-3-large: Strong general-purpose performance (3072 dimensions)
  • Cohere embed-v3: Excellent for multilingual applications
  • Domain-Specific Fine-tuning: For specialized domains (legal, medical), fine-tune on your specific corpus

Production Considerations

Retrieval Quality

The retrieval step is often the bottleneck in RAG system performance. Poor retrieval means even the best LLM can't provide accurate answers.

Hybrid Search

Combine dense vector search with sparse keyword search (BM25) for robust retrieval:

# Pseudo-code for hybrid search
dense_results = vector_db.search(query_embedding, top_k=20)
sparse_results = bm25_index.search(query, top_k=20)
final_results = rerank(dense_results + sparse_results, top_k=5)

Query Transformation

Don't just use the raw user query for retrieval:

  • HyDE (Hypothetical Document Embeddings): Generate a hypothetical answer, embed it, and use that for retrieval
  • Multi-Query: Generate 3-5 variations of the query and retrieve for each
  • Query Decomposition: Break complex questions into sub-questions

Prompt Engineering

The quality of your prompt template directly impacts response quality.

System Prompt Best Practices:

You are an expert assistant with access to relevant documentation.

Guidelines:
- Only answer based on the provided context
- If the context doesn't contain relevant information, explicitly state this
- Cite specific sections when making claims
- If information seems contradictory, acknowledge this

Context:
{retrieved_context}

Question: {user_question}

Answer:

Evaluation Framework

Production RAG systems require continuous monitoring and evaluation.

Key Metrics:

  1. Retrieval Metrics

    • Precision@K: What percentage of retrieved chunks are relevant?
    • Recall: Are we retrieving all relevant information?
    • MRR (Mean Reciprocal Rank): How quickly do we find the best answer?
  2. Generation Metrics

    • Faithfulness: Does the response accurately reflect the retrieved context?
    • Relevance: Does the response actually answer the question?
    • Groundedness: Are claims backed by the provided context?
  3. System Metrics

    • Latency: P50, P95, P99 response times
    • Cost: Embedding + retrieval + generation costs per query
    • Cache hit rate: How often can you serve from cache?

Scaling Considerations

Caching Strategy

Implement multi-level caching to reduce costs and latency:

  1. Exact Match Cache: Store responses for exact query matches
  2. Semantic Cache: Use vector similarity to find near-identical queries
  3. Context Cache: Cache embedding results for frequently accessed documents

Async Processing

For non-real-time applications, use async job queues:

# Batch processing for better throughput
async def process_batch(queries):
    embeddings = await embed_batch(queries)
    results = await vector_db.batch_search(embeddings)
    responses = await llm.batch_generate(results)
    return responses

Common Pitfalls

1. Context Window Limits

Don't just stuff the entire context window. Quality over quantity—5 highly relevant chunks beat 20 marginally relevant ones.

2. Ignoring Document Freshness

Implement incremental indexing to keep your knowledge base up-to-date without full reindexing.

3. No Fallback Strategy

Always have a fallback when retrieval yields poor results. Options include:

  • Expanding search parameters
  • Falling back to broader topic searches
  • Clearly communicating inability to answer

Real-World Architecture

Here's a production-ready architecture we've deployed:

User Query
    ↓
Query Rewriting & Expansion
    ↓
Hybrid Search (Vector + BM25)
    ↓
Reranking Model (Cohere Rerank)
    ↓
Context Selection & Assembly
    ↓
LLM Generation (with streaming)
    ↓
Response Validation
    ↓
User Response

Key Features:

  • Average latency: 800ms (P95: 1.2s)
  • 95% retrieval precision
  • Cost: $0.02 per query at scale
  • Handles 10K+ documents with 500+ queries/day

Conclusion

Building production RAG systems is more than just connecting a vector database to an LLM. It requires careful attention to document processing, retrieval quality, prompt engineering, and robust evaluation. Start simple, measure everything, and iterate based on real user feedback.

The field is evolving rapidly—techniques like ColBERT for late interaction, learned sparse retrieval, and multi-hop reasoning are pushing the boundaries of what's possible. Stay curious and keep experimenting.


Want to build a production RAG system for your organization? Our team has deployed RAG systems processing billions of data points. Let's talk about your specific use case.

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